EviNet: evidence-based network enrichment analysis

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How to begin? icon icon
Identification of driver genes icon icon
Exploration of molecular landscapes icon icon
Using Venn diagrams icon icon
Using stand-alone software icon icon

Potentially, you can obtain much more useful output by running the perl script NEA.pl off-line.
NEA.pl is the script that executes network enrichment analysis at this web site.
Please note that while running analysis online, on this web-site, you can both look up the command line and download specific input and output files.
Watch the text and links that appear after the current analysis finished.
You can to use them either as a reference or as input to a modified analysis off-line. _tmpAGS, _tmpFGS, and _tmpNET contain your submitted gene list(s), the collection of functional gene sets, and the network.

R package NEArender on CRAN
R package NEArender on local site
perl script NEA.pl from Merid et al. (2014)
TAB-delimited file with pre-compliled AGSs, gene IDS accompanied with AGS ID:
SomaticMutations.TCGA-2008
TAB-delimited file with results of a differential expression analysis, gene IDs followed by fold change, p, and FDR values in multiple contrasts:
P.matrix.NoModNodiff_wESC.VENN.txt
Known compatibility issues:
This site best works with Google Chrome and Mozilla Firefox. Some functions do not work with IE 11 (opening pre-compliled lists from previously uploaded files).
EviNet v. 1.0
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